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273 Open
299 Closed
144 Open Issues
144 Open issues
75 Closed Issues
219 Open & Closed Issues
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F: Computational neuroscience
F: Data Analysis
F: Neuroimaging
F: Utilities
good first issue
S: Bad licence
S: Future meeting
S: Inactive upstream
S: In review
S: In testing
S: Needs-commit-rights
S: Needs COPR import
S: Needs documentation
S: Needs import
S: Needs legal
S: Needs packaging
S: Needs review
S: Next meeting
S: On hold
S: Requested
S: RPM Fusion
S: Waiting on upstream
S: WIP
T: Blog
T: Community
T: Documentation
T: Outreach and dissemination
T: Software
Milestone unset
F34 Beta freeze 2021-02-23
F30 beta
F30 GA
CNS2019
F31 GA 2019-10-29
Urgent: the Daleks have attacked!
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#236
Package psics
Opened
5 years ago
by
ankursinha
. Modified
5 years ago
D: Normal
F: Computational neuroscience
S: Needs packaging
T: Software
Normal
#237
Package vaa3D
Opened
5 years ago
by
ankursinha
. Modified
4 years ago
D: Normal
F: Neuroimaging
T: Software
S: Needs packaging
Normal
#244
Package k2pdfopt
1
Opened
4 years ago
by
ankursinha
. Modified
4 years ago
F: Utilities
T: Software
D: Normal
S: Needs packaging
Normal
#253
python-silx Software library for X-ray data analysis
2
Opened
4 years ago
by
lbazan
. Modified
2 years ago
F: Utilities
D: Normal
T: Software
S: Needs packaging
Normal
#256
Package MEDYAN: Mechanochemical Dynamics of Active Networks
Opened
4 years ago
by
ankursinha
. Modified
4 years ago
D: Normal
F: Computational neuroscience
S: Needs packaging
T: Software
Normal
#261
Package freesurfer: An open source software suite for processing and analyzing (human) brain MRI images.
3
Opened
4 years ago
by
ankursinha
. Modified
4 years ago
D: Normal
F: Neuroimaging
S: Needs packaging
T: Software
Normal
#262
Package c3d: a command-line tool for converting 3D images between common file formats.
Opened
4 years ago
by
ankursinha
. Modified
4 years ago
D: Normal
F: Neuroimaging
S: Needs packaging
T: Software
Normal
#263
Package python-ica-aroma: a data-driven method to identify and remove head motion-related artefacts from functional MRI data.
Opened
4 years ago
by
ankursinha
. Modified
4 years ago
D: Normal
F: Neuroimaging
S: Needs packaging
T: Software
Normal
#264
Package neurox: A parallel & distributed asynchronous simulator of extended Hodgkin-Huxley neuron models
Opened
4 years ago
by
ankursinha
. Modified
4 years ago
D: Normal
F: Computational neuroscience
S: Needs packaging
T: Software
Normal
#271
Package brainiak: Brain Imaging Analysis Kit
Opened
4 years ago
by
ankursinha
. Modified
4 years ago
D: Normal
F: Neuroimaging
T: Software
S: Needs packaging
Normal
#275
Package PyGPC: a toolbox using generalized polynomial chaos
1
Opened
4 years ago
by
mhough
. Modified
4 years ago
D: Normal
F: Data Analysis
S: Needs packaging
T: Software
Normal
#278
Package PyRates: a tool for building rate-based neural models
Opened
4 years ago
by
mhough
. Modified
4 years ago
D: Normal
F: Computational neuroscience
S: Needs packaging
T: Software
Normal
#279
Package medInria: a multi-platform medical image processing and visualization software
5
Opened
4 years ago
by
mhough
. Modified
2 years ago
D: Normal
F: Neuroimaging
T: Software
S: Needs packaging
Normal
#283
scidash/neuronunit: A package for data-driven validation of neuron and ion channel models using SciUnit
1
Opened
4 years ago
by
ankursinha
. Modified
3 years ago
D: Normal
F: Computational neuroscience
S: Needs packaging
T: Software
Normal
#285
Do we have the required imagej plugins for neuron tracing?
Opened
4 years ago
by
ankursinha
. Modified
4 years ago
D: Normal
F: Neuroimaging
T: Software
Normal
#286
Package flatironinstitute/CaImAn: Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
1
Opened
4 years ago
by
ankursinha
. Modified
2 years ago
D: Normal
F: Data Analysis
F: Computational neuroscience
S: Needs packaging
T: Software
Normal
#288
Package KNOSSOS — 3D Image Annotation
Opened
4 years ago
by
ankursinha
. Modified
4 years ago
D: Normal
F: Data Analysis
F: Neuroimaging
S: Needs packaging
T: Software
Normal
#289
Package AlexEMG/DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals, including humans
Opened
4 years ago
by
ankursinha
. Modified
4 years ago
D: Normal
F: Utilities
S: Needs packaging
T: Software
Normal
#295
Package jpgill86/neurotic: Curate, visualize, annotate, and share your behavioral ephys data using Python
Opened
4 years ago
by
ankursinha
. Modified
4 years ago
D: Normal
F: Data Analysis
S: Needs packaging
T: Software
Normal
#305
Package napari/napari: napari: a fast, interactive, multi-dimensional image viewer for python
1
Opened
4 years ago
by
ankursinha
. Modified
2 years ago
D: Normal
F: Utilities
S: Needs packaging
T: Software
Normal
#319
Package Ermentrout/xppaut: General differential equation solver and bifurcation package
Opened
4 years ago
by
ankursinha
. Modified
4 years ago
D: Normal
F: Computational neuroscience
F: Utilities
S: Needs packaging
T: Software
Normal
#342
Package vispy
Opened
4 years ago
by
major
. Modified
2 years ago
F: Utilities
D: Normal
T: Software
S: Needs packaging
Normal
#344
Package nengo
Opened
4 years ago
by
ankursinha
. Modified
4 years ago
D: Normal
F: Computational neuroscience
S: Needs packaging
T: Software
Low
#345
Package Brainrender
Opened
4 years ago
by
ankursinha
. Modified
4 years ago
D: Normal
F: Utilities
S: Needs packaging
T: Software
Normal
#347
Package python-doit
Opened
4 years ago
by
ankursinha
. Modified
4 years ago
D: Normal
F: Utilities
S: Needs packaging
T: Software
Low
#349
Package ctlee/gamer: Geometry-preserving Adaptive Mesher
3
Opened
4 years ago
by
ankursinha
. Modified
2 years ago
D: Normal
F: Computational neuroscience
S: Needs packaging
T: Software
Normal
#352
Package phy: interactive visualization and manual spike sorting of large-scale ephys data
Opened
4 years ago
by
ankursinha
. Modified
4 years ago
D: Normal
F: Data Analysis
F: Utilities
S: Needs packaging
T: Software
Normal
#359
Package cellfinder: Automated 3D cell detection and registration of whole-brain images
Opened
4 years ago
by
ankursinha
. Modified
4 years ago
D: Normal
F: Data Analysis
F: Neuroimaging
F: Utilities
S: Needs packaging
T: Software
Normal
#360
Package mopet
Opened
4 years ago
by
ankursinha
. Modified
4 years ago
D: Normal
F: Utilities
S: Needs packaging
T: Software
Normal
#362
Package AllenInstitute/AllenSDK: code for reading and processing Allen Institute for Brain Science data
Opened
3 years ago
by
ankursinha
. Modified
3 years ago
D: Normal
F: Utilities
S: Needs packaging
T: Software
Normal
#367
Package adamreeve/npTDMS: NumPy based Python module for reading TDMS files produced by LabView
Opened
3 years ago
by
ankursinha
. Modified
3 years ago
D: Normal
F: Data Analysis
F: Neuroimaging
S: Needs packaging
T: Software
Normal
#370
Package nwb-explorer
1
Opened
3 years ago
by
ankursinha
. Modified
2 years ago
D: Normal
F: Data Analysis
F: Utilities
T: Software
S: Needs packaging
Normal
#371
Package numba
8
Opened
3 years ago
by
ankursinha
. Modified
a year ago
D: Normal
F: Utilities
S: Needs packaging
T: Software
S: Waiting on upstream
Normal
#373
Package GHFC/HyPyP: The Hyperscanning Python Pipeline
Opened
3 years ago
by
ankursinha
. Modified
3 years ago
D: Normal
F: Data Analysis
F: Neuroimaging
S: Needs packaging
T: Software
good first issue
Normal
#375
Package Bioconductor - bigPint
Opened
3 years ago
by
ankursinha
. Modified
3 years ago
D: Normal
F: Data Analysis
F: Utilities
S: Needs packaging
T: Software
Normal
#376
Package brian2tools
3
Opened
3 years ago
by
ankursinha
. Modified
2 years ago
T: Software
S: Needs packaging
F: Computational neuroscience
F: Utilities
F: Data Analysis
D: Normal
Normal
#378
Package SpikeInterface/spikely: A GUI for running popular spike sorting algorithms on extracellular data of any file format.
Opened
3 years ago
by
ankursinha
. Modified
2 years ago
D: Normal
F: Data Analysis
S: Needs packaging
T: Software
Normal
#383
Package JASP: Graphical Statistical Software for Common Statistical Designs
Opened
3 years ago
by
ankursinha
. Modified
3 years ago
D: Normal
F: Data Analysis
good first issue
S: Needs packaging
S: Needs documentation
T: Software
Normal
#387
Package BlueBrain/CoreNeuron: Simulator optimized for large scale neural network simulations.
Opened
3 years ago
by
ankursinha
. Modified
3 years ago
D: Normal
F: Computational neuroscience
T: Software
S: Needs packaging
Normal
#397
Package holoviews: Stop plotting your data - annotate your data and let it visualize itself.
Opened
3 years ago
by
ankursinha
. Modified
3 years ago
D: Normal
F: Data Analysis
F: Utilities
S: Needs packaging
T: Software
Normal
#398
Package NeurodataWithoutBorders/nwb-jupyter-widgets: Explore the hierarchical structure of NWB 2.0 files and visualize data with Jupyter widgets.
Opened
3 years ago
by
ankursinha
. Modified
3 years ago
F: Data Analysis
F: Utilities
good first issue
S: Needs packaging
T: Software
D: Normal
Normal
#407
Package spinalcordtoolbox: software dedicated to the processing and analysis of spinal cord MRI data.
Opened
3 years ago
by
ankursinha
. Modified
3 years ago
D: Normal
F: Neuroimaging
S: Needs packaging
T: Software
Normal
#416
Package flatironinstitute/CaImAn: Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
Opened
3 years ago
by
ankursinha
. Modified
3 years ago
D: Normal
F: Data Analysis
F: Neuroimaging
S: Needs packaging
T: Software
Normal
#426
Package genn-team/genn: GeNN is a GPU-enhanced Neuronal Network simulation environment based on code generation for Nvidia CUDA.
Opened
3 years ago
by
ankursinha
. Modified
2 years ago
D: Normal
F: Computational neuroscience
T: Software
Normal
#433
Package iqr: simulator for large scale neural systems
1
Opened
3 years ago
by
ankursinha
. Modified
2 years ago
D: Normal
F: Computational neuroscience
T: Software
S: Needs packaging
S: Requested
Normal
#434
Package FlyBrainLab components
Opened
3 years ago
by
ankursinha
. Modified
3 years ago
D: Normal
F: Data Analysis
F: Utilities
T: Software
S: Needs packaging
Normal
#437
Package FlyBrainLab/Neuroballad
1
Opened
3 years ago
by
ankursinha
. Modified
3 years ago
D: Normal
F: Computational neuroscience
F: Utilities
S: Needs packaging
T: Software
Normal
#439
Package BlueBrain/morph-tool: A toolbox for morphology editing. It aims to provide small helper programs that perform simple tasks.
Opened
3 years ago
by
ankursinha
. Modified
3 years ago
D: Normal
F: Data Analysis
F: Utilities
S: Needs packaging
T: Software
Normal
#445
Package bluepysnap
Opened
3 years ago
by
ankursinha
. Modified
3 years ago
D: Normal
F: Computational neuroscience
S: Needs packaging
T: Software
Normal
#448
Package denisecailab/minian: miniscope analysis pipeline with interactive visualizations
Opened
2 years ago
by
ankursinha
. Modified
2 years ago
D: Normal
F: Data Analysis
F: Neuroimaging
S: Needs packaging
T: Software
Normal